Study on the metabolic potential of six ancient bacterial lineages in deep-sea sediments using MAGs macrogene assembly method
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//CR(MAGs)6(Lokiarchaeota, Thorarchaeota, Heimdallarchaeota, Bathyarcheota, ThermoplasmatalesHadesarchaea)31magLokiarchaeotaBathyarchaeotamagCRLokiarchaeotaLokiarchaeotaWood-LjungdahlcomarchaeotaarchaeotaCR31(MAGs)6(Lokiarchaeota, Thorarchaeota, Heimdallarchaeota, Bathyarcheota, ThermoplasmatalesHadesarchaea)LokiarchaeotaBathyarchaeotaMAGsLokiarchaeotaDNAIQ-Tree16(L2L3L4L5L6L14L15L16L18L22L24S3S8S10S17S19)(VT + F + R10) 1000HMMsearchHMMMAGsBlastKoalKEGGUSEARCH-ublastMEROPSbinKEGG,CR Lokiarchaeota(rG)pH81mmCRU1378U1379CR Lokiarchaeota:G0rRCHNOSZ(4C)Qr16S rRNACR5,12616S rRNA(3125%)archaeotaLokiarchaeota531mag11(60%5%)magNCBI (nr)MAG(60-75%)CR_1215%Heimdallarchaeota16MAGs6Lokiarchaeota, Thorarchaeota, Heimdallarchaeota, Bathyarcheota, ThermoplasmatalesHadesarchaeaCRMAGs(ESPs)espCRHeimdallarchaeotaLokiarchaeota MAGs (CR_06, CR_11)ESPsCRarchaeota, HadesarchaeotaThermoplasmata MAGsespMCR(mcrABCDG)CRMCRHMMmag(AssA)(BssA)C-CLokiarchaeota CR_06Lokiarchaeota CR_06BCRBBzd4(BzdONPQ)BCRiCR_06BCR(LokiarchaeotaBathyarchaeotaArchaeoglobus)BCRPQATP/ATP[4Fe-4S]a(ON)aaCR_06BCR4(CR_06-contig-100_3495)CR_06 MAG(= 1110)> 200xCR_ Lokiarchaeota (CR_06)CRAsgardAsgard MAGs(CR_06, 07, 08, 1112)CO2H2OrG '(rG ' = 196.3 [kJ/mol])CR(86%)Lokiarchaetoa():(a)CO2H2O(rG ' =1206
/
/
CR(MAGs)
6(Lokiarchaeota, Thorarchaeota, Heimdallarchaeota, Bathyarcheota, ThermoplasmatalesHadesarchaea)31magLokiarchaeotaBathyarchaeotamag
CR
LokiarchaeotaLokiarchaeota
Wood-Ljungdahlcom
archaeota
archaeota
CR
31(MAGs)6(Lokiarchaeota, Thorarchaeota, Heimdallarchaeota, Bathyarcheota, ThermoplasmatalesHadesarchaea)
LokiarchaeotaBathyarchaeotaMAGsLokiarchaeota
DNA
IQ-Tree16(L2L3L4L5L6L14L15L16L18L22L24S3S8S10S17S19)
(VT + F + R10) 1000
HMMsearchHMMMAGs
BlastKoalKEGG
USEARCH-ublastMEROPSbin
KEGG,
CR Lokiarchaeota(rG)pH81mm
CRU1378U1379CR Lokiarchaeota
:
G0rRCHNOSZ(4C)
Qr
16S rRNA
CR5
,12616S rRNA
(3125%)archaeotaLokiarchaeota
531mag11(60%5%)mag
NCBI (nr)
MAG(60-75%)CR_1215%Heimdallarchaeota
16MAGs6Lokiarchaeota, Thorarchaeota, Heimdallarchaeota, Bathyarcheota, ThermoplasmatalesHadesarchaea
CRMAGs(ESPs)esp
CRHeimdallarchaeotaLokiarchaeota MAGs (CR_06, CR_11)ESPs
CRarchaeota, HadesarchaeotaThermoplasmata MAGsesp
MCR(mcrABCDG)CRMCR
HMMmag
(AssA)(BssA)C-C
Lokiarchaeota CR_06Lokiarchaeota CR_06BCRBBzd4(BzdONPQ)
BCRiCR_06BCR(LokiarchaeotaBathyarchaeotaArchaeoglobus)BCR
PQATP/ATP[4Fe-4S]
a(ON)aa
CR_06BCR4(CR_06-contig-100_3495)
CR_06 MAG(= 1110)> 200x
CR_ Lokiarchaeota (CR_06)CRAsgard
Asgard MAGs(CR_06, 07, 08, 1112)CO2H2O
rG '(rG ' = 196.3 [kJ/mol])CR
(86%)
Lokiarchaetoa
():
(a)CO2H2O(rG ' =1206.3 [kJ/mol]);
(b)CO2H2O(rG ' =373.6 [kJ/mol]);
(c)CO2H2O(rG ' = - 119.9 [kJ/mol])
Lokiarchaeota
[NiFe]3b3dNADH+NADPH+H2Asgard
(IV)()CR_06
CR_14MCR(mcrABCDG)
CR_144()(TMAO/DMSO)n -(TMAO)
corcoroidCoB - CoM/F420(hdrABCDmvhADG)CR_14M (CoM)B (CoB)CoM- sh
s -(mtrA- h)mtrACoM5,6,7,8-(H4MPT)CODH/ACSaWood-Ljungdahl
CR_14MAG
archaeota CR_14archaeota
a(AcsB)CR_14 AcsBAsgardChloroflexiAltiarchaeales
AltiarchaealesAcsB
ChloroflexiACSarchaeotaAsgardAltiarchaealesACS
ACSarchaeotaACS(CoM, H4MPT)aarchaeota
CRMAGsESPESPs
archaeotaLokiarchaeotamag
(Aminicenantes, TA06, Aerophobetes, Atribacteria, HelarchaeotaBathyarchaeota)
CR_Asgard/CR_Lokiarchaeota/atpBCR(Bzd)
Lokiarchaeota()
531mag(Lokiarchaeota, Thorarchaeota, Heimdallarchaeota, Bathyarcheota, ThermoplasmatalesHadesarchaea)
11mag(>60%<10%)
90%archaeotaAsgardMAGMAG
()
Lokiarchaeota
Lokiarchaeota
archaeota
CR
mag
CRMAGs
()Wood-Ljungdahl
CR
[1]
[2]
[3]
[4]
[5]
[6]
[7]Muhammad Zohaib Nawazsmall RNA
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Tag: Study on the metabolic potential of six ancient bacterial
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